From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
American Journal of Botany2018Vol. 105(3), pp. 446–462
Citations Over TimeTop 1% of 2018 papers
Joseph F. Walker, Ya Yang, Tao Feng, Alfonso Timoneda, Jessica Mikenas, Vera Hutchison, Caroline Edwards, Ning Wang, Sonia Ahluwalia, Julia Olivieri, Nathanael Walker‐Hale, Lucas C. Majure, Raúl Puente, Gudrun Kadereit, Maximilian Lauterbach, U. Eggli, Hilda Flores‐Olvera, Helga Ochoterena, Samuel F. Brockington, Michael J. Moore, Stephen A. Smith
Abstract
Transcriptomes are useful both for species-tree inference and for uncovering evolutionary complexity within lineages. Through analyses of gene-tree conflict and multiple methods of species-tree inference, we demonstrate that phylogenomic data can provide unparalleled insight into the evolutionary history of Caryophyllales. We also discuss a method for overcoming computational challenges associated with homolog clustering in large data sets.
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