ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5
Proteins Structure Function and Bioinformatics2005Vol. 60(2), pp. 207–213
Citations Over TimeTop 10% of 2005 papers
Kevin Wiehe, Brian G. Pierce, Julian Mintseris, Wei Tong, Robert J. Anderson, Rong Chen, Zhiping Weng
Abstract
We present an evaluation of the results of our ZDOCK and RDOCK algorithms in Rounds 3, 4, and 5 of the protein docking challenge CAPRI. ZDOCK is a Fast Fourier Transform (FFT)-based, initial-stage rigid-body docking algorithm, and RDOCK is an energy minimization algorithm for refining and reranking ZDOCK results. Of the 9 targets for which we submitted predictions, we attained at least acceptable accuracy for 7, at least medium accuracy for 6, and high accuracy for 3. These results are evidence that ZDOCK in combination with RDOCK is capable of making accurate predictions on a diverse set of protein complexes.
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