Performance of 3D-Database Molecular Docking Studies into Homology Models
Journal of Medicinal Chemistry2004Vol. 47(3), pp. 764–767
Citations Over TimeTop 10% of 2004 papers
Connie Oshiro, Erin K. Bradley, John Eksterowicz, Erik Evensen, Michelle L. Lamb, J. Kevin Lanctot, Santosh Putta, Robert V. Stanton, Peter D. J. Grootenhuis
Abstract
The performance of docking studies into protein active sites constructed by homology model building was investigated using CDK2 and factor VIIa screening data sets. When the sequence identity between model and template near the binding site area is greater than approximately 50%, roughly 5 times more active compounds are identified than would be found randomly. This performance is comparable to docking to crystal structures.
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