PRIDE: Quality control in a proteomics data repository
Database2012Vol. 2012(0), pp. bas004–bas004
Citations Over TimeTop 10% of 2012 papers
Attila Csordás, David Ovelleiro, Rui Wang, Jennifer Foster, Daniel Ríos, Juan Antonio Vizcaíno, Henning Hermjakob
Abstract
The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. DATABASE URL: http://www.ebi.ac.uk/pride/.
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