Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis
GigaScience2018Vol. 7(5)
Citations Over Time
Abstract
Necklace allows a comprehensive transcriptome to be built from a combination of assembled and annotated transcripts, which results in a more comprehensive transcriptome for the majority of organisms. In addition RNA-seq data are mapped back to this newly created superTranscript reference to enable differential expression testing with standard methods.
Related Papers
- → An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome(2022)85 cited
- → Comparing de novo and reference-based transcriptome assembly strategies by applying them to the blood-sucking bug Rhodnius prolixus(2015)47 cited
- → Reference transcriptome assembly and annotation for perennial ryegrass(2017)8 cited
- → Comparison of de novo and reference genome-based transcriptome assembly pipelines for differential expression analysis of RNA sequencing data(2022)2 cited
- → Assembly of RNA ‐Seq Short Reads into Transcriptome Sequences(2017)