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Steven L. Salzberg

Johns Hopkins University(US)Johns Hopkins Medicine(US)

Publications by Year

Research Areas

Genomics and Phylogenetic Studies, RNA and protein synthesis mechanisms, Chromosomal and Genetic Variations, Machine Learning in Bioinformatics, RNA modifications and cancer

Most-Cited Works

→ Fast gapped-read alignment with Bowtie 2(2012)59,697 cited
→ HISAT: a fast spliced aligner with low memory requirements(2015)25,442 cited
→ Ultrafast and memory-efficient alignment of short DNA sequences to the human genome(2009)22,764 cited
→ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation(2010)16,337 cited
→ FLASH: fast length adjustment of short reads to improve genome assemblies(2011)15,403 cited
→ StringTie enables improved reconstruction of a transcriptome from RNA-seq reads(2015)14,979 cited

→ Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype(2019)

14,975 cited

→ The Sequence of the Human Genome(2001)13,619 cited

→ TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions(2013)13,584 cited

→ Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks(2012)12,811 cited