Jeffrey P. Thompson
Publications by Year
Research Areas
Protein Structure and Dynamics, Phase Equilibria and Thermodynamics, Material Dynamics and Properties, Gene Regulatory Network Analysis, Lipid Membrane Structure and Behavior
Most-Cited Works
- → APOGEE: Global optimization of standard, generalized, and extended pooling problems via linear and logarithmic partitioning schemes(2011)123 cited
- → Forcefield_PTM:Ab InitioCharge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications(2013)109 cited
- → WESTPA 2.0: High-Performance Upgrades for Weighted Ensemble Simulations and Analysis of Longer-Timescale Applications(2022)98 cited
- → Mechanistic Insights into Passive Membrane Permeability of Drug-like Molecules from a Weighted Ensemble of Trajectories(2022)43 cited
- → CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization(2011)31 cited
- → Exploration of Cryptic Pockets Using Enhanced Sampling Along Normal Modes: A Case Study of KRAS G12D(2024)22 cited
- → A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0](2023)14 cited
- → Codon Selection Affects Recruitment of Ribosome-Associating Factors during Translation(2019)7 cited
- → System-size effects in ionic fluids under periodic boundary conditions(2016)5 cited
- → A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1](2022)4 cited