Francesco Beghini
Yale University(US)
Publications by Year
Research Areas
Gut microbiota and health, Probiotics and Fermented Foods, Genomics and Phylogenetic Studies, Clostridium difficile and Clostridium perfringens research, Microbial Community Ecology and Physiology
Most-Cited Works
- → Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3(2021)2,128 cited
- → Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle(2019)1,691 cited
- → Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome(2018)1,283 cited
- → Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4(2023)1,198 cited
- → Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation(2019)1,014 cited
- → Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals(2021)949 cited
- → Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0(2020)852 cited
- → Accessible, curated metagenomic data through ExperimentHub(2017)537 cited
- → Reporting guidelines for human microbiome research: the STORMS checklist(2021)432 cited
- → Critical Assessment of Metagenome Interpretation: the second round of challenges(2022)374 cited