Lane Votapka
University of California San Diego(US)
Publications by Year
Research Areas
Protein Structure and Dynamics, Computational Drug Discovery Methods, Gene Regulatory Network Analysis, RNA and protein synthesis mechanisms, Spectroscopy and Quantum Chemical Studies
Most-Cited Works
- → POVME 2.0: An Enhanced Tool for Determining Pocket Shape and Volume Characteristics(2014)237 cited
- → Weighted Implementation of Suboptimal Paths (WISP): An Optimized Algorithm and Tool for Dynamical Network Analysis(2014)192 cited
- → Mechanism of 150-cavity formation in influenza neuraminidase(2011)145 cited
- → SEEKR: Simulation Enabled Estimation of Kinetic Rates, A Computational Tool to Estimate Molecular Kinetics and Its Application to Trypsin–Benzamidine Binding(2017)98 cited
- → Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning(2015)81 cited
- → SARS-CoV-2 evolved variants optimize binding to cellular glycocalyx(2023)55 cited
- → Two Relations to Estimate Membrane Permeability Using Milestoning(2016)50 cited
- → SEEKR2: Versatile Multiscale Milestoning Utilizing the OpenMM Molecular Dynamics Engine(2022)41 cited
- → Bridging scales through multiscale modeling: a case study on protein kinase A(2015)26 cited
- → A Computational Assay that Explores the Hemagglutinin/Neuraminidase Functional Balance Reveals the Neuraminidase Secondary Site as a Novel Anti-Influenza Target(2018)26 cited