Jari Björne

Publications by Year

Research Areas

Biomedical Text Mining and Ontologies, Topic Modeling, Natural Language Processing Techniques, Semantic Web and Ontologies, Bioinformatics and Genomic Networks

Most-Cited Works

• → A large-scale evaluation of computational protein function prediction(2013)1,078 cited
• → BioInfer: a corpus for information extraction in the biomedical domain(2007)482 cited
• → All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning(2008)284 cited
• → Comparative analysis of five protein-protein interaction corpora(2008)233 cited
• → Extracting complex biological events with rich graph-based feature sets(2009)194 cited
• Generalizing Biomedical Event Extraction(2011)
• → Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization(2013)123 cited
• → Complex event extraction at PubMed scale(2010)121 cited
• → Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing(2018)100 cited
• TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task(2013)