Justin P. Shaffer
California State University System(US)California State University, Fresno(US)
Publications by Year
Research Areas
Gut microbiota and health, Plant Pathogens and Fungal Diseases, Genomics and Phylogenetic Studies, Mycorrhizal Fungi and Plant Interactions, Microbial Community Ecology and Physiology
Most-Cited Works
- → Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions(2022)469 cited
- → Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome(2020)194 cited
- → Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity(2019)178 cited
- → Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity(2022)173 cited
- → Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information(2020)132 cited
- → Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy(2022)118 cited
- → An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae)(2017)80 cited
- → Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies(2023)78 cited
- → Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California(2021)76 cited
- → Enhancing untargeted metabolomics using metadata-based source annotation(2022)74 cited