NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Citations Over TimeTop 1% of 2006 papers

Abstract

NCBI's reference sequence (RefSeq) database (http://www.ncbi.nlm.nih.gov/RefSeq/) is a curated non-redundant collection of sequences representing genomes, transcripts and proteins. The database includes 3774 organisms spanning prokaryotes, eukaryotes and viruses, and has records for 2,879,860 proteins (RefSeq release 19). RefSeq records integrate information from multiple sources, when additional data are available from those sources and therefore represent a current description of the sequence and its features. Annotations include coding regions, conserved domains, tRNAs, sequence tagged sites (STS), variation, references, gene and protein product names, and database cross-references. Sequence is reviewed and features are added using a combined approach of collaboration and other input from the scientific community, prediction, propagation from GenBank and curation by NCBI staff. The format of all RefSeq records is validated, and an increasing number of tests are being applied to evaluate the quality of sequence and annotation, especially in the context of complete genomic sequence.

Related Papers

• → ProGMap: an integrated annotation resource for protein orthology(2009)20 cited
• → Comparison of the current RefSeq, Ensembl and EST databases for counting genes and gene discovery(2004)39 cited
• → OligoRAP – an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity(2009)14 cited
• → Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues(2023)5 cited
• → Information Organisation and Sequence Databases(2017)